Its a bit hard to picture without ...well uno pictures... but you will only see the screws when you within a couple of metres of them....unless you have shot eyesight.
I would put them on the frame side if its really worrying you ....but beware! you may need to clamp every batten before you screw to get a good bite......
When you screw 2 bits of timber together its sort of preferably to have the screw side timber pre-drilled so the screw doesn't bite (too much anyway) and all the pull is in the back piece of timber....NOTE this is purely from my own experience ...I have never read this or been taught this from anywhere so it could be blowies...![]()